[1]张志远,郑 直,田晓怡.融合基因检测方法的最新研究进展[J].现代检验医学杂志,2024,39(05):205-212.[doi:10.3969/j.issn.1671-7414.2024.05.038]
 ZHANG Zhiyuan,ZHENG Zhi,TIAN Xiaoyi.Advancements in Latest Fusion Gene Detection Methods: A Comprehensive Review[J].Journal of Modern Laboratory Medicine,2024,39(05):205-212.[doi:10.3969/j.issn.1671-7414.2024.05.038]
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融合基因检测方法的最新研究进展()
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《现代检验医学杂志》[ISSN:/CN:]

卷:
第39卷
期数:
2024年05期
页码:
205-212
栏目:
综述
出版日期:
2024-09-15

文章信息/Info

Title:
Advancements in Latest Fusion Gene Detection Methods: A Comprehensive Review
文章编号:
1671-7414(2024)05-200-08
作者:
张志远1郑 直1田晓怡2
(1. 中国医学科学院基础医学研究所/ 北京协和医学院基础学院生物化学与分子生物学系,北京 100005;2. 国家儿童医学中心/ 首都医科大学附属北京儿童医院检验中心,北京 100045)
Author(s):
ZHANG Zhiyuan1 ZHENG Zhi1 TIAN Xiaoyi2
(1. Department of Molecular Biology and Biochemistry, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences/School of Basic Medicine, Peking Union Medical College, Beijing 100005, China; 2. Center of Clinical Laboratory, Beijing Childre
关键词:
融合基因下一代测序液体活检
分类号:
Q781
DOI:
10.3969/j.issn.1671-7414.2024.05.038
文献标志码:
A
摘要:
融合基因指的是由两个或多个基因片段在基因组中发生重组而形成的新序列,其在肿瘤发生、发展过程中具有重要的生物学功能和临床意义。融合基因的检测可以为肿瘤的早期诊断、风险分层和靶向治疗等提供重要指导。传统的融合基因检测方法占据主导地位,但存在灵敏度偏低,成本偏高或技术复杂,难以大规模应用的局限。随着生物新技术的迅猛发展,一系列全新的融合基因检测方法逐渐涌现,为融合基因检测提供新的思路。该文综述了融合基因检测的传统方法以及近年来发展的测序技术,旨在为融合基因的检测提供思路,为相关疾病的诊断及精准治疗提供指导。
Abstract:
Fusion genes are defined as novel sequences formed through the recombination of two or more gene fragments within the genome, which play significant biological functions and clinical significance in tumorigenesis and development. The detection of fusion genes can provide important guidance for early diagnosis, risk stratification and targeted therapy of tumors. Traditional fusion gene detection methods dominate, but there are several limitations such as low sensitivity, high cost and complex technology, making them difficult to apply on widespread application. With the rapid advancements of new biotechnology, a series of new fusion gene detection methods are gradually emerging, providing new alternatives for fusion gene detection. This article reviews traditional fusion gene detection methods and the sequencing technologies developed in recent years, aiming to provide ideas for the detection of fusion genes and guidance for the diagnosis and precise treatment of related diseases.

参考文献/References:

[1] TANIUE K, AKIMITSU N. Fusion genes and RNAs in cancer development[J]. Non-Coding RNA, 2021, 7(1): 10.
[2] HEYER E E, BLACKBURN J. Sequencing strategies for fusion gene detection[J]. BioEssays, 2020, 42(7): e2000016.
[3] MANIER S, SALEM K Z, PARK J, et al. Genomic complexity of multiple myeloma and its clinical implications[J]. Nature Reviews Clinical Oncology, 2017, 14(2): 100-113.
[4] 张军炜, 管欣超, 刘韬, 等. 融合基因分析方法在肿瘤研究中的应用与发展[J]. 广州医药, 2023, 54(8):1-8. ZHANG Junwei, GUAN Xinchao, LIU Tao, et al. Development and application of fusion gene analysis methods in tumors research[J]. Guangzhou Medical Journal, 2023, 54(8): 1-8.
[5] QIN Fujun, ZHANG Yanmei, LIU Jia, et al. SLC45A3- ELK4 functions as a long non-coding chimeric RNA[J]. Cancer Letters, 2017, 404: 53-61.
[6] GAO Qingsong, LIANG Wenwei, FOLTZ S M, et al. Driver fusions and their implications in the development and treatment of human cancers[J]. Cell Reports, 2018, 23(1): 227-238, e3.
[7] WARLI S M, WARLI M H, PRAPISKA F F. PCA3 and TMPRSS2: ERG urine level as diagnostic biomarker of prostate cancer[J]. Research and Reports in Urology, 2023, 15: 149-155.
[8] INABA H, MULLIGHAN C G. Pediatric acute lymphoblastic leukemia[J]. Haematologica, 2020, 105(11): 2524-2539.
[9] 刘伟平, 官凡琪, 宋耀辉, 等. 慢性粒细胞白血病患者BCR-ABL 融合基因P210 表达对病程判断和预后评估的临床价值[J]. 现代检验医学杂志, 2019,34(5): 12-15. LIU Weiping, GUAN Fanqi, SONG Yaohui, et al. Clinical value of BCR-ABL fusion gene P210 expression of patients with chronic myeloid leukemia for course judgment and prognosis evaluation[J]. Journal of Modern Laboratory Medicine, 2019, 34(5): 12-15.
[10] VELLICHIRAMMAL N N, CHATURVEDI N K, JOSHI S S, et al. Fusion genes as biomarkers in pediatric cancers: a review of the current state and applicability in diagnostics and personalized therapy[J]. Cancer Letters, 2021, 499: 24-38.
[11] WANG Yue, SHI Tao, SONG Xueru, et al. Gene fusion neoantigens: emerging targets for cancer immunotherapy[J]. Cancer Letters, 2021, 506: 45-54.
[12] 陈哲, 金敏威, 陈颖, 等. 应用R 带显带技术对151例急性非淋巴细胞白血病行细胞遗传学分析[J]. 中国卫生检验杂志, 2009, 19(12): 2902-2903. CHEN Zhe, JIN Minwei, CHEN Ying, et al. Cytogenetic analysis on 151 cases of acute nonlymphocytic leukemia by R-banding technique[J]. Chinese Journal of Health Laboratory Technology, 2009, 19(12): 2902- 2903.
[13] MCCULLOCH D, BROWN C, ILAND H. Retinoic acid and Arsenic trioxide in the treatment of acute promyelocytic leukemia: current perspectives[J]. OncoTargets and Therapy, 2017, 10: 1585-1601.
[14] 孙恒娟, 杜成坎, 李红, 等. 细胞遗传学检测方法对MLL 基因异常儿童急性白血病的诊断意义[J]. 检验医学, 2022, 37(12): 1196-1199. SUN Hengjuan, DU Chengkan, LI Hong, et al. Diagnostic value of cytogenetics in acute leukemia with MLL gene abnormality[J]. Laboratory Medicine, 2022, 37(12): 1196-1199.
[15] HUANG Huifang, CHEN Jiadi. Chromosome bandings[J]. Methods in Molecular Biology (Clifton, N.J.), 2017, 1541: 59-66.
[16] 李林飞, 宋银森, 李东晓, 等. 染色体核型分析联合荧光原位杂交技术对儿童急性髓系白血病M2 的诊疗意义[J]. 实验与检验医学, 2021, 39(3): 570-572. LI Linfei, SONG Yinsen, LI Dongxiao, et al. The diagnostic and therapeutic significance of chromosomal karyotype analysis combined with fluorescence in situ hybridization technology for childhood acute myeloid leukemia M2[J]. Experimental and Laboratory Medicine, 2021, 39(3): 570-572.
[17] SCHMITT F, DI LORITO A, VIELH P. Molecular testing on cytology for gene fusion detection[J]. Frontiers in Medicine(Lausanne), 2021, 8: 643113.
[18] MARKEY F B, RUEZINSKY W, TYAGI S, et al. Fusion FISH imaging:single-molecule detection of gene fusion transcripts in situ[J]. PLoS One, 2014, 9(3): 0093488.
[19] LIM A S T, LIM T H. Fluorescence in situ hybridization on tissue sections[J]. Methods in Molecular Biology (Clifton, N.J.), 2017, 1541: 119-125.
[20] GAO Lu, XU Yan, WENG Lanchun, et al. A rare cause of persistent leukocytosis with massive splenomegaly: myeloid neoplasm with BCR-PDGFRA rearrangementcase report and literature review[J]. Medicine, 2022, 101(24): e29179.
[21] 王芳, 陈雪, 吴祁生, 等. 国际指南更新引领血液肿瘤临床诊疗进入精准医学和基因组时代[J]. 中华检验医学杂志, 2023, 46(9): 888-892. WANG Fang, CHEN Xue, WU Qisheng, et al. Update of international guidelines leads the clinical diagnosis and treatment of hematological malignancies into the era of precision medicine and genomics[J]. Chinese Journal of Laboratory Medicine, 2023, 46(9): 888-892.
[22] KOZUMA Y, TOYOKAWA G, SETO T. ALK testing methods: is there a winner or loser?[J]. Expert Review of Anticancer Therapy, 2019, 19(3): 237-244.
[23] 蒋析文, 李三喜, 梁志坤, 等. 基于下一代测序的基因融合检测技术在肿瘤伴随诊断中的研究进展[J].中华预防医学杂志, 2022, 56(12): 1880-1888. JIANG Xiwen, LI Sanxi, LIANG Zhikun, et al. Research progression of gene fusion detection technology based on next generation sequencing in tumor companion diagnostics[J]. Chinese Journal of Preventive Medicine, 2022, 56(12): 1880-1888.
[24] BATRA U, NATHANY S, SHARMA M, et al. IHC versus FISH versus NGS to detect ALK gene rearrangement in NSCLC: all questions answered?[J]. Journal of Clinical Pathology, 2022, 75(6): 405-409.
[25] ZHAO Ruiying, GUO Lianying, ZHANG Bo, et al. Identification and therapeutic evaluation of ALK rearrangements in non-small-cell lung cancer[J]. Journal of Pathology Clinical Research, 2022, 8(6): 538-549.
[26] CHUPRADIT S, KM NASUTION M, RAHMAN H S, et al. Various types of electrochemical biosensors for leukemia detection and therapeutic approaches[J]. Analytical Biochemistry, 2022, 654: 114736.
[27] 陈美君, 刘雅兰, 王颖, 等. 新型比率型电化学生物传感器的构建及对BCR/ABL 融合基因的检测[J].分析化学, 2022, 50(5): 692-704. CHEN Meijun, LIU Yalan, WANG Ying, et al. A novel ratiometric electrochemical biosensor for detection of BCR/ABL fusion gene[J]. Chinese Journal of Analytical Chemistry, 2022, 50(5): 692-704.
[28] LEI Yun, WANG Kun, YANG Jiayong, et al. Sequencespecific amperometric detection based on a doubleprobe mode and enzyme-mediated multiple signal electrocatalysis for the double-stranded DNA of PML/ RARα-related fusion gene[J]. Analytica Chimica Acta, 2022, 1231: 340436.
[29] OLIVEIRA L S, AVELINO K Y P S, OLIVEIRA S R D E, et al. Flexible genosensors based on polypyrrole and graphene quantum dots for PML/RARα fusion gene detection: a study of acute promyelocytic leukemia in children[J]. Journal of Pharmaceutical and Biomedical Analysis, 2023, 235: 115606.
[30] AVELINO K Y P S, OLIVEIRA L S, SANTOS M R, et al. Electrochemical DNA biosensor for chronic myelocytic leukemia based on hybrid nanostructure[J]. Bioelectrochemistry(Amsterdam, Netherlands), 2022, 147: 108176.
[31] KIAEI A, ONSORI H, ALIJANI A, et al. Detection of t(8;14) c-myc/IgH gene rearrangement by long-distance polymerase chain reaction in patients with diffuse large B-cell lymphoma[J]. Hematology Oncology and Stem Cell Therapy, 2016, 9(4): 141-146.
[32] ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Consortium. Pan-cancer analysis of whole genomes[J]. Nature, 2020, 578(7793): 82-93.
[33] LI Weihua, LIU Yutao, LI Wenbin, et al. Intergenic breakpoints identified by DNA sequencing confound targetable kinase fusion detection in NSCLC[J]. Journal of Thoracic Oncology, 2020, 15(7): 1223-1231.
[34] 孟凡萍, 郝坡. 渝东北地区441 例白血病患者融合基因表达特点分析[J]. 现代检验医学杂志, 2020,35(2): 15-17. MENG Fanping, HAO Po. Analysis of expression characteristics of fusion gene in 441 patients with leukemia in northeastern Chongqing[J]. Journal of Modern Laboratory Medicine, 2020, 35(2): 15-17.
[35] CHEN Xue, WANG Fang, ZHANG Yang, et al. Fusion gene map of acute leukemia revealed by transcriptome sequencing of a consecutive cohort of 1000 cases in a single center[J]. Blood Cancer Jounal, 2021, 11(6): 112.
[36] HAYNES B C, BLIDNER R A, CARDWELL R D, et al. An integrated next-generation sequencing system for analyzing DNA mutations,gene fusions, and RNA expression in lung cancer[J]. Translational Oncology, 2019, 12(6): 836-845.
[37] HEDEGAARD J, THORSEN K, LUND M K, et al. Next-generation sequencing of RNA and DNA isolated from paired fresh-frozen and formalin-fixed paraffinembedded samples of human cancer and normal tissue[J]. PLoS One, 2014, 9(5): e98187.
[38] SCHR?DER J, KUMAR A, WONG S Q. Overview of fusion detection strategies using next-generation sequencing[J]. Methods in Molecular Biology, 2019, 1908: 125-138.
[39] STANGL C, DE BLANK S, RENKENS I, et al. Partner independent fusion gene detection by multiplexed CRISPR-Cas9 enrichment and long read nanopore sequencing[J]. Nature Communications, 2020, 11(1): 2861.
[40] BACHER U, SHUMILOV E, FLACH J, et al. Challenges in the introduction of next-generation sequencing (NGS) for diagnostics of myeloid malignancies into clinical routine use[J]. Blood Cancer Journal, 2018, 8(11): 113.
[41] 中国抗癌协会肿瘤病理专业委员会, 中华医学会肿瘤学分会肺癌专家委员会. 国家病理质控中心. 非小细胞肺癌融合基因检测临床实践中国专家共识(2023 版)[J]. 中华病理学杂志, 2023,52(6):565-573. Molecular Pathology Collaboration Group of Tumor Pathology Committee of China Anti-Cancer Association, Chinese Medical Association Chinese Society of Oncology, Pathology Quality Control Center. Expert consensus on clinical practice of fusion genes detection in non-small cell lung cancer in China (2023 version)[J]. Chinese Journal of Pathology, 2023,52(6):565-573.
[42] NIKANJAM M, KATO S, KURZROCK R. Liquid biopsy: current technology and clinical applications[J]. Journal of Hematology & Oncology, 2022, 15(1): 131.
[43] YU Dan, LI Yixin, WANG Maoye, et al. Exosomes as a new frontier of cancer liquid biopsy[J]. Molecular Cancer, 2022, 21(1): 56.
[44] ZHOU Yuju, ZHANG Ying, GONG Huan, et al. The role of exosomes and their applications in cancer[J]. International Journal of Molecular Sciences, 2021, 22(22): 12204.

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备注/Memo

备注/Memo:
基金项目: 国家自然科学基金青年科学基金项目(82202630)。
作者简介:张志远(2000-),男,在读硕士生,研究方向:生物化学与分子生物学,E-mail:1810115127@bjmu.edu.com。
通讯作者: 田晓怡(1985-),女,博士,副主任技师,主要从事临床检验诊断学研究,E-mail:xiaoyikkxl@163.com。
郑 直(1966-),男,博士,教授,主要从事生物化学与分子生物学研究,E-mail:zhizheng100@126.com。
更新日期/Last Update: 2024-09-15